Healthy Pumpkin Muffins
on Nov 10, 2023, Updated Sep 02, 2025
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Pumpkin muffins are my absolute favorite during the fall and winter! These healthy pumpkin muffins have no added sugar (besides chocolate chips of course if you choose to add them), and are perfect for babies and toddlers! I hope you and your little love them as much as I do!

Why These Healthy Pumpkin Muffins are Great for Toddlers
- Nutrient-Rich Ingredients: This recipe includes mashed bananas and pumpkin, offering a double dose of nutritional goodness. Bananas are rich in potassium, while pumpkin is packed with vitamins and antioxidants.
- Easy to Make: With just a handful of simple ingredients, these Pumpkin Muffins are incredibly easy to whip up. Perfect for those busy days when you want to treat your toddler to something special without spending hours in the kitchen.
- Perfectly Portioned: Mini muffins are just the right size for tiny hands. They make for a convenient and mess-free snack that your toddler can enjoy at home or on the go. Perfect for BLW!
- Versatile: The addition of pumpkin pie spice gives these muffins that quintessential fall flavor. Feel free to add a handful of chocolate chips for an extra touch of sweetness, making them even more irresistible for little ones.
- Freezer-Friendly: Bake a batch and freeze the extras for those days when you need a quick and wholesome snack. Just pop them in the microwave for a few seconds, and you’re good to go!
Now, let’s dive into the step-by-step instructions for making these delightful Pumpkin Muffins.
Ingredients
- 3 mashed bananas
- 1 cup pumpkin puree
- 2 eggs
- 1 1/2 cups flour
- 2 tsp baking powder
- 1 tsp pumpkin pie spice
- Optional: Chocolate chips
How to Make Toddler Pumpkin Muffins
- Preheat your oven to 350°F (175°C).
- In a large mixing bowl, combine the mashed bananas, pumpkin puree, eggs, flour, baking powder, and pumpkin pie spice.
- If you’re adding chocolate chips, fold them into the batter gently.
- Spoon the batter into the mini muffin tin, filling it to the top.
- Bake in the preheated oven for 15-18 minutes or until a toothpick inserted into the center of a muffin comes out clean.
- Allow the muffins to cool in the tin for a few minutes before transferring them to a wire rack to cool completely.
Substitutions
Bananas: Use applesauce or mashed sweet potato if you’re out of bananas. The flavor will change slightly but still work well.
Pumpkin Purée: Mashed butternut squash or sweet potato can be swapped.
Eggs: To make the muffins egg-free, replace each egg with a flax egg (1 tbsp ground flax + 3 tbsp water per egg).
Flour: All-purpose, whole wheat, or a 1:1 gluten-free flour blend will work.
Pumpkin Pie Spice: Substitute with a mix of cinnamon, nutmeg, and a pinch of ginger or cloves if needed.
Chocolate Chips: Use raisins, chopped dates, or leave them out for a no-sugar option.
Storing Extra Healthy Pumpkin Muffins
Store these Pumpkin Muffins in an airtight container at room temperature for up to 3 days. For longer storage, freeze the muffins in a sealed freezer bag for up to 3 months. When you’re ready to enjoy them, simply thaw at room temperature or heat in the microwave for a quick and easy snack.
Common Questions
Can I make these toddler pumpkin muffins into regular sized muffins instead of mini ones?
- Yes you can! Just bake them for 18-21 minutes, or until a toothpick comes out clean.
Are these healthy pumpkin muffins gluten-free?
- They can be if you use a certified gluten-free 1:1 flour blend.
Can I give these autumn muffins to babies?
- Yes! These muffins are naturally sweetened with banana and don’t require added sugar. Skip the chocolate chips for babies under 1, and always cut into small, soft pieces.
More Breakfast Ideas for Kids
Strawberry Oat Bars – These Strawberry Oat Bars are a make-ahead snack or breakfast for toddlers. Made with real strawberries and hearty oats, they’re soft, fruity, and just sweet enough—no refined sugar needed. Easy to slice into handheld portions, they’re perfect for lunchboxes, on-the-go snacks, or a healthy treat the whole family will enjoy.
Spinach Muffins – Spinach Muffins are a great way to sneak leafy greens into your toddler’s diet without a fight. Naturally sweetened and bright green from blended spinach and banana, these muffins are soft, freezer-friendly, and just the right size for little hands. Ideal for breakfast, snack time, or a veggie-packed addition to lunch.
Apple Oat Bars – These Apple Oat Bars are soft, cinnamon-spiced, and packed with apple for a naturally sweet treat. Perfect for toddlers, they’re made with simple ingredients like oats and banana, and they hold together beautifully for easy, no-mess snacking. Great for breakfast, preschool lunchboxes, or anytime you need a quick homemade snack.
Chocolate Chip Banana Muffins – These Chocolate Chip Banana Muffins are a toddler favorite—soft, moist, and filled with naturally sweet banana and just enough chocolate to feel like a treat. They’re made with better-for-you ingredients and no refined sugar, so you can feel good about serving them for breakfast, snack, or even dessert.
1-Bowl Microwave French Toast – This 1-Bowl Microwave French Toast is a genius breakfast hack for busy mornings. Just mix a few ingredients in a bowl, microwave for a minute or two, and you’ve got warm, soft French toast that’s perfect for toddlers. It’s quick, customizable, and doesn’t leave a pile of dishes—win-win!
If your kids love these healthy pumpkin muffins let me know! Tag me @reallittlemeals so I can hear about all of your delicious creations!

Healthy Pumpkin Muffins
Ingredients
- 3 bananas, mashed
- 1 cup pumpkin puree
- 2 eggs
- 1.5 cups flour
- 2 tsp baking powder
- 1 tsp pumpkin pie spice, can also use cinnamon
- optional chocolate chips
Instructions
- Preheat your oven to 350 F.
- Mix all the ingredients together in a large bowl.
- Spoon the batter into the mini muffin tin, filling it to the top.
- Bake in the preheated oven for 15-18 minutes.
- Cool and enjoy! Storage instructions are above.
Notes
Nutrition
Nutrition information is automatically calculated, so should only be used as an approximation.




How many muffins does this make?
24 mini muffins!
Really yummy and not too sweet at all. Will definitely make again 🧡
Made these with almond flour because thats what I had on hand. My 16 month old LOVES them! 🙂
I forgot the eggs 🤦🏻♀️ but otherwise turned out great!